Chorny, Ilya wrote:
When I run galaxy as the actual user using the code I committed to my fork, I
run into a problem with dataset_*.dat files that have associated data wherein
the associated data files are copied from the job_working_directory into the
files directory. That directory is owned by the actual user and not by the
galaxy user. I don't have a problem with the ownership but the permissions of
the directory and associated files get changed to 777. Any thoughts on why
the permissions get changed. The permissions are 755 and 644 for dirs and
files respectively when in the working directory so why do they change when
the directory is moved?
Any help would be greatly appreciated.
Hi Ilya,
What's your umask on the command line? Galaxy tries to honor this umask
if possible, see the collect_associated files method of the Tool class
in lib/galaxy/tools/__init__.py.
--nate
Best,
Ilya
Ilya Chorny Ph.D.
Bioinformatics - Intern
icho...@illumina.commailto:icho...@illumina.com
858-202-4582
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