Re: [galaxy-dev] genotypeGVCFs in galaxy from GATK 3.0

2014-05-21 Thread Björn Grüning
Hi Nik, the current wrappers are hosted here: https://github.com/bgruening/galaxytools/tree/master/gatk2 and maintained by Nicola Soranzo, Jim Johnson and me. The current plan is to realease a final version of GATK2.8 and start working on GATK3 after that. I'm in contact the Geraldine Van der

[galaxy-dev] genotypeGVCFs in galaxy from GATK 3.0

2014-05-20 Thread Nikhil Joshi
Hi all, Is anyone working on (or has already created) wrappers for GATK 3.0? Specifically, I'm looking for a wrapper for genotypeGVCFs, but it seems like I would want all the GATK wrappers to be updated. Any help is highly appreciated! - Nik. -- Nikhil Joshi Bioinformatics Analyst/Programmer