Re: [galaxy-dev] how do I pass the URL of the input and output files to my tool wrapper?

2011-10-17 Thread Chorny, Ilya
Would it be difficult to add the url as an attribute of the input and output parameters ($param.url)? If you point me to where these values are set, I can try to make the changes to the code. Thanks, Ilya -Original Message- From: galaxy-dev-boun...@lists.bx.psu.edu

Re: [galaxy-dev] how do I pass the URL of the input and output files to my tool wrapper?

2011-10-17 Thread Chorny, Ilya
So we came up with a work around and I wouldn't mind getting your opinion on it. Specifically with respect to passing cookie_path. I could not figure out how to get the proxy prefix from the universe_wsgi.ini file via the $__app__ call. Also you mention in the wiki the the $__app__ may get

Re: [galaxy-dev] how do I pass the URL of the input and output files to my tool wrapper?

2011-10-16 Thread Chorny, Ilya
PDF report. Sent from my iPhone On Oct 15, 2011, at 7:36 PM, James Taylor ja...@jamestaylor.org wrote: Excerpts from Chorny, Ilya's message of 2011-10-14 23:46:25 +: Anyone know if it possible to pass the url (shown in the eye ball) to a tool wrapper? Ilya, this isn't currently

Re: [galaxy-dev] how do I pass the URL of the input and output files to my tool wrapper?

2011-10-15 Thread James Taylor
Excerpts from Chorny, Ilya's message of 2011-10-14 23:46:25 +: Anyone know if it possible to pass the url (shown in the eye ball) to a tool wrapper? Ilya, this isn't currently supported because it breaks the abstraction between the web interface and tools (tools shouldn't know they are