Hello guys, I've got a problem with the integration of the BWA Tool in Galaxy. I installed BWA and Galaxy in a virtual box and now I want integrate BWA as a tool. For this I have to do this steps:
$ sudo cp /home/ubuntu/galaxy-dist/bwa-0.7.4/bwa /usr/local/bin now bwa can be run from the command line $ bwa The Galaxy tool also requires a loc file which contains the locations of indexes for locally stored genome builds. We don't have any so we can just use the empty sample: $ cp tool-data/bwa_index.loc.sample tool-data/bwa_index.loc $ sh run.sh --reload The problem is, that in my tool-data folder doesn't exist bwa files even if bwa is installed and aso linked in the bin folder! I hope you can help me, because I don't know what to do now! Thanks and greets, Anna ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
