You are probably missing the samtools and bowtie2 dependencies. Make
sure Galaxy can find the binaries.
-Raj
On Fri Mar 7 00:16:07 2014, Langhorst, Brad wrote:
I’m slowly wrapping my head around the new data manager stuff… but I
don’t think I quite have it yet.
I was able to download hg19 us
I’m slowly wrapping my head around the new data manager stuff… but I don’t
think I quite have it yet.
I was able to download hg19 using the reference genome tool
I see where it puts downloaded files now - took me a while to figure that out.
When I run the sam fa build tool it fails like this:
