Re: [galaxy-dev] question about Filtering Cufflink files

2011-05-08 Thread vasu punj
tely map transcript..   Vasu  --- On Sun, 5/8/11, shamsher jagat wrote: From: shamsher jagat Subject: Re: [galaxy-dev] question about Filtering Cufflink files To: galaxy-...@bx.psu.edu Date: Sunday, May 8, 2011, 10:01 AM Further to my question, It appear that there is some problem with

Re: [galaxy-dev] question about Filtering Cufflink files

2011-05-08 Thread shamsher jagat
Further to my question, It appear that there is some problem with the filter option: When I use the isoform/gene exp file as such it work fine but when I filter these files with either parameter such as status if test was successful or on p value it return me empty file. The way am saving the file

Re: [galaxy-dev] question about Filtering Cufflink files

2011-05-03 Thread Jeremy Goecks
Hello, This is a bug and has been fixed. I reran your analyses on our test server and they completed successfully, so you should be good to go. Best, J. On May 3, 2011, at 6:08 AM, shamsher jagat wrote: > Jeremy, > > I have been trying to follow the steps in filtering Cufflink out put files

[galaxy-dev] question about Filtering Cufflink files

2011-05-03 Thread shamsher jagat
Jeremy, I have been trying to follow the steps in filtering Cufflink out put files you have described in one of the previous messages ( http://gmod.827538.n3.nabble.com/Re-downstream-analysis-of-cuffdiff-out-put-td2836457.html ): I have shared histroy with you, but in summary: File 35: when F