[galaxy-dev] setting parameters for uploading a file for a java program

2013-06-18 Thread vijayalakshmi
Hi all, I have a tool written in java for which I want to upload a file as a parameter. I have trouble figuring out how to do it. I tried writing the xml file similar to 'tools/data-source/upload.xml' but it is not working. *correlation.xml* tool id=correlation name=Compute correlation

Re: [galaxy-dev] setting parameters for uploading a file for a java program

2013-06-18 Thread James Taylor
The upload_dataset parameter type is very specific to the upload tool. You may be able to make this work but it is not a supported feature (meaning, we can't tell you how to do it). You probably want to use a normal data input (input type='data' ...). Users first upload datasets to Galaxy using