Here's some specific information about what the PATH variable is for UNIX
systems and how to set it: http://kb.iu.edu/data/acar.html
Many folks do the following so that you only need to add a single directory to
your path:
(a) install all tools in one directory;
(b) create a "bin" directory in
Hi Elwood,
It sounds like you are getting closer, and that the instructions a few
days ago from Jeremy are helping:
http://dev.list.galaxyproject.org/transferring-Trapnell-et-al-programs-into-a-one-user-instance-of-Galaxy-tc4660245.html#none
For each of these tools in #2, you will need to inst
s.bx.psu.edu
> Subject: [galaxy-dev] simplest way to connect RNAseq tools for a local
> Galaxy instance
> Message-ID:
>
> Content-Type: text/plain; charset="iso-8859-1"
>
> I have:
> 1) downloaded the Galaxy framework into a Mac Pro desktop with 64gb
I have:
1) downloaded the Galaxy framework into a Mac Pro desktop with 64gb ram
2) downloaded Mac OS versions of Tophat2, Bowtie2, and the Cufflink suite
to the mac
3) have looked at the Galaxy wiki on connecting these
[http://wiki.galaxyproject.org/Admin/Config/Tool%20Dependencies]
4) I have gott
