shashi shekhar wrote:
Hi All,
if i am using pbs . in this i am getting stderror and stdout . then how can
i handle such type of problem. can i check the standard error before
displaying anything on browser.
Hi Shashi,
There's no difference when running via PBS or locally in this regard.
If
Hi All,
if i am using pbs . in this i am getting stderror and stdout . then how can
i handle such type of problem. can i check the standard error before
displaying anything on browser.
Reagrds
shashi shekhar
___
Please keep all replies on
Hi all,
I am using one tool which gives stdout and stderr . it is showing red color
(job failed) in browser.How can i resolve such type of problem.
Regards
shashi shekhar
___
Please keep all replies on the list by using reply all
in your
You need a wrapper to capture the stderr
It would be nice if there were an option to base a tools status on the unix
return value (for well behaved programs)
On May 26, 2011, at 8:36 AM, shashi shekhar meshash...@gmail.com wrote:
Hi all,
I am using one tool which gives stdout and stderr
On Thu, May 26, 2011 at 1:36 PM, shashi shekhar meshash...@gmail.com wrote:
Hi all,
I am using one tool which gives stdout and stderr . it is showing red color
(job failed) in browser.How can i resolve such type of problem.
Regards
shashi shekhar
See issue 325,
-dev-boun...@lists.bx.psu.edu
[mailto:galaxy-dev-boun...@lists.bx.psu.edu] Namens shashi shekhar
Verzonden: donderdag 26 mei 2011 14:36
Aan: galaxy-dev@lists.bx.psu.edu
Onderwerp: [galaxy-dev] stdout and stderr
Hi all,
I am using one tool which gives stdout and stderr . it is showing red color
(job
:19
Aan: 'shashi shekhar'
CC: galaxy-dev@lists.bx.psu.edu
Onderwerp: Re: [galaxy-dev] stdout and stderr
Alternatively you can redirect your STDOUT and/or STDERR into a LOG txt file as
additional output to the tool.
I do many times the same since it allows the realtime tracking in the log file
On Thu, May 26, 2011 at 2:42 PM, Bossers, Alex alex.boss...@wur.nl wrote:
PS: 2 is STDERR and 1 is STDOUT. One could do a redirect of STDERR to STDOUT
and STDOUT to a logfile. You won’t get a red box though when errors occur!
Right - if you need to detect an error state via the return code,
, Alex
CC: shashi shekhar; galaxy-dev@lists.bx.psu.edu
Onderwerp: Re: [galaxy-dev] stdout and stderr
On Thu, May 26, 2011 at 2:42 PM, Bossers, Alex alex.boss...@wur.nl wrote:
PS: 2 is STDERR and 1 is STDOUT. One could do a redirect of STDERR to STDOUT
and STDOUT to a logfile. You won’t get a red box
On 27/05/11 00:04, Peter Cock wrote:
I regard fixing issue 325 as one of the top priorities in Galaxy
Can't agree more with you Peter!
This bug and other tool wrapper related bugs make it harder and more
tedious to contribute tool wrappers. It's a big turn off for me.
Florent
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