Re: [galaxy-dev] trackster error for viewing rat data (rn5)

2013-11-22 Thread Shu-Yi Su
Hi Jeremy, Thank you so much for reply. You are right…..I just took the first few lines in fastq file and mapped with bowtie. Now it works with this small dataset. I am trying to find the error in my complete dataset, but haven't spotted any yet. Do you think the error is from reading the

Re: [galaxy-dev] trackster error for viewing rat data (rn5)

2013-11-22 Thread Jeremy Goecks
When visualizing a BAM dataset, Galaxy generates a bigwig dataset of read coverage. Trying to visualize this dataset is causing the issue. You could try to convert the BAM to BigWig manually (click on dataset's pencil icon -- convert format -- convert to bigwig) and see if there are any issues