Re: [galaxy-dev] galaxy with torque

2014-12-01 Thread Fernandez Edgar
Hi John, First, thank you very much for your prompt answer. It's extremely appreciated. Secondly, I have some other questions: whatever answers you can provide me with, will be greatly helpful. Please, forgive my beginner level understanding of an DRM system. 1. Once I compile, make and

[galaxy-dev] Deleted tool temp dir

2014-12-01 Thread Pandori n
Hi all. Config: - galaxy-dist stable (changeset: 11247:a9a0ac9c1afa) [Dec/18/2013] - NFS - Cluster (torque) When i start my WF, on step 2, in 'job_working_directory' created temp (intermediate) dir (for tool step 3). But when step 2 is completed, temp dir (in 'job_working_directory')

Re: [galaxy-dev] Nginx Config

2014-12-01 Thread Peter van Heusden
Wow that's a lot of upstreams... what is your Galaxy configuration? On 26 November 2014 at 20:26, Nicholas Kline nx...@case.edu wrote: Hi, I am trying to setup a local production Galaxy running on Ubuntu, Nginx, PostgreSQL, and ProFTD. When visiting http://localhost, 502 Bad Gateway is

Re: [galaxy-dev] Galaxy Docker and Tool Shed repository for Chinese researchers?

2014-12-01 Thread Dannon Baker
Hi Steven, Using Docker can simplify deployment, enhance reproducibility, and enhance security with the eventual goal of allowing users to run untrusted code on the shared Galaxy infrastructure, to name a few reasons. For details on how to set up your own tool shed, this page should help you

Re: [galaxy-dev] 回复: Help testing Galaxy - new release is coming soon

2014-12-01 Thread Martin Čech
Hello, you might want to look at https://github.com/bgruening/docker-galaxy-stable/blob/master/galaxy/Dockerfile and other Bjoern's docker recipes: https://github.com/bgruening/docker-recipes M. On Mon, Dec 1, 2014 at 8:45 PM, Weiyan Shen shenw...@gmail.com wrote: Hi bjoern.gruening‍, It is