Re: [galaxy-dev] pbs_python can't be installed via scramble

Hello Will, Thanks again for your reply. Yes I had already tried these but I got the same container.hpp error. The only thing different in my case is that the names of the directories of the directories are a bit different: export PBS_PYTHON_INCLUDEDIR=/usr/local/include/ export

[galaxy-dev] Some issues with job submission to pulsar

Hello, I am setting up a new instance of Galaxy (based on the latest dev branch on github repo) configured to submit the jobs to a remote cluster via pulsar. I used the usegalaxy playbook to get the configuration parameters for the galaxy job_conf.xml and pulsar app.yml files. I was partially

[galaxy-dev] _JAVA_OPTIONS config parameter in job_conf.xml.sample_advanced

Wondering if anyone has reported this for the doc/sample file team: Isn't the java config example line in that file wrong (at least for my java 1.6): -Xmx=6GB With a setting of -Xmx=10g, Picard wouldn't run sortSam, instead this stderr text: * Fatal error: Exit code 1 ()