Re: [galaxy-dev] job_conf.xml and nativespecification

Hi Laure, a hacky way it to use dynamic job destinations: https://wiki.galaxyproject.org/Admin/Config/Jobs#Dynamic_Destination_Mapping You can get the username via python and change "nativeSpecification" on demand. Hope this helps, Bjoern Am 14.09.2016 um 17:07 schrieb Laure QUINTRIC: > Hi

Re: [galaxy-dev] Modifying a Cloud Cluster Instance

Hi Enis, Yes I figured what I was doing wrong. Using Cloudman to restart services overwrote my confs. Using the CLI to manage services keeps everything in place, though I would like to figure out what is the optimal way to move to 16.07. Wait for the AMI or update? -- David Lapointe Ph.D.

Re: [galaxy-dev] Modifying a Cloud Cluster Instance

Hi David, I totally missed this email from you - apologies! Are you still trying to do this or did you figure it out? Following the general guidelines on customizing the instance is a good place to start. There is an option in CloudMan to turn on non-signed SSL (from the Admin page) but the steps

[galaxy-dev] job_conf.xml and nativespecification

Hi galaxy users, while using galaxy with drmaa and real user on drm system, I would like to know if there's a way to set the variable PBS_O_LOGNAME to the real user name in the job_conf.xml : -v PBS_O_LOGNAME=[REAL_USER_NAME??] -q test -l mem=100gb Thank you, Laure

[galaxy-dev] multiqc

Hi, I'm having trouble installing multiqc, this is the current error message: Traceback (most recent call last): File "setup.py", line 32, in """.format(version)) ValueError: zero length field name in format interestingly I could install it on our developer instance which runs on 16.01

Re: [galaxy-dev] Problem downloading HTML datasets

Not that helpful, but we have the same problem with our 16.04 instance. On Tue, Sep 13, 2016 at 10:21 AM, Stephanie LE GRAS wrote: > Hi there, > > > > I’m currently facing several problems with the galaxy instance I’m > managing. I’m going to send a mail per problem so sorry

Re: [galaxy-dev] Odd error, solution not understood

Ah, thank you very much, Hans-Rudolf. That did the trick. Best regards, Scott On Wed, Sep 14, 2016 at 6:56 AM, Hans-Rudolf Hotz wrote: > Hi Scott > > click on the question mark next to 'database' in your history item and set > the "Database/Build" to the genome you need. > > >

Re: [galaxy-dev] Odd error, solution not understood

Hi Scott click on the question mark next to 'database' in your history item and set the "Database/Build" to the genome you need. Regards, Hans-Rudolf On 09/13/2016 09:11 PM, Scott Szakonyi wrote: Hi all, I'm getting the following error when attempting to do a trackster visualization: