[galaxy-dev] galaxy venv problem

2016-10-28 Thread Beginner TI
Hi, During the installation or galaxy instance, I set up a directory to install all the python dependencies. Basically, whenever I install python modules, I do something like: python setup.py install --prefix=/my/python/dir as a result, there are tons of stuff installed there. I added this path

[galaxy-dev] Call for GMOD talks at PAG

2016-10-28 Thread Scott Cain
Hi, I am pleased to announce a call for talks to be given at the Plant and Animal Genomes conference this January in the GMOD workshop on Wednesday, January 18th. Any talks that involve the development or use of GMOD software are welcome. In particular this year, I'd really like to highlight plu

Re: [galaxy-dev] odose

2016-10-28 Thread Björn Grüning
Hi Michiel, the IUC (https://github.com/galaxyproject/tools-iuc) is adopting wrappers and helping with fixing them. Can you create a PR with everything what you have against this repo, we will review it and guide you through the process. Once, this is merged we will help maintaining it. Thanks, B

Re: [galaxy-dev] conda management of tools dependent on python3

2016-10-28 Thread Björn Grüning
Hi Wolfgang, can you describe step by step what you are trying to do? A conda package ships it's own python version, you can see this in the build-string py35_0 for example. So conda can handle all python version independent of the python version of miniconda. Cheers, Bjoern > Dear all, > > I'

[galaxy-dev] Usegalaxy.org Data Rsync Connection refused

2016-10-28 Thread Georgios Nikolis
Dear all, we are currently working on setting up a new local Galaxy installation and I would like to obtain the genome reference data available on the public Galaxy instance. I am following the instructions on the Wiki page (https://wiki.galaxyproject.org/Admin/UseGal