Re: [galaxy-dev] New datatypes with code dependencies

It's for the sniffer. I'll have to look into the magic bit, but it's obvious enough that someone else would have thought about it and done it already (or maybe I"m overly optimistic) I could have a version without the sniffer to merge to Galaxy, but it's not super ideal. On Wed, Dec 14, 2016 at

Re: [galaxy-dev] New datatypes with code dependencies

Hi Cristal, Am 14.12.2016 um 22:07 schrieb Cristel Thomas: > Hello, > > We'd like to add some datatypes to Galaxy specific to flow cytometry > (finally). One of the datatype is a binary format which requires rpy2/R > to be read (no good python module available to do that). > How do you guys deal

[galaxy-dev] New datatypes with code dependencies

Hello, We'd like to add some datatypes to Galaxy specific to flow cytometry (finally). One of the datatype is a binary format which requires rpy2/R to be read (no good python module available to do that). How do you guys deal with that? Thanks, Cris

Re: [galaxy-dev] multiple datatypes input in 16.07

Hi Chris, I am glad that we figured this out. So I am not sure what the best strategy for datatypes with code dependencies is, we should open a new thread or git issue and see if someone can help with that. Thanks, Sam On Wed, Dec 14, 2016 at 10:59 AM, Cristel Thomas

[galaxy-dev] Tools pick up Python modules from Galaxy core rather than installed tool dependencies

Dear devs I was wondering if anyone had any suggestions as to the cause of a peculiar error I'm seeing when running the latest versions of the devteam "join" and "fastq_paired_end_joiner". The tools appear to be picking up Python modules from the Galaxy library, rather than from the

Re: [galaxy-dev] Testing workflows

Hi Eric, this is a script I have used in the past https://github.com/scholtalbers/galaxy-test-workflows It doesn't give you the nice feedback that you probably want, but maybe you have some use for it anyway. Cheers, Jelle On Wed, Dec 14, 2016 at 4:26 AM, Eric Rasche wrote: >

[galaxy-dev] Fwd: Fwd: Usegalaxy.org Data Rsync Connection refused

Dear all, I was wondering if anybody was able to get the rsync server datacache.g2.bx.psu.edu to work? Have there been non-documented changes? We still get following messages: rsync -avzP rsync://datacache.g2.bx.psu.edu/indexes/phiX . rsync: failed to connect to datacache.g2.bx.psu.edu