Re: [galaxy-dev] any introduce for how Mako and JavaScript work in galaxy?

It is of great help to me.Thank you very much. steven 2017-07-08 0:38 GMT+08:00 Björn Grüning : > Hi Steven, > > we have collected a few tutorials and slides here: > > http://galaxyproject.github.io/training-material/topics/dev/ > > especially this: > >

Re: [galaxy-dev] Improved DRMAAJobRunner (Peter van Heusden)

Hi Matthias My job_conf.xml still has the old config of running upload locally, so it has a section after the section. Are you using a proxy such as nginx with your Galaxy server? Thanks, Peter On Mon, 10 Jul 2017 at 11:50 Matthias Bernt wrote: > Hi Peter, > >

Re: [galaxy-dev] Fwd: Mismatched Files

Changsu, It sounds very much like multiple distinct galaxy instances are running against the same database, is that the case here? What happens in those situations is that each galaxy instance associates a dataset ID with a specific file, and the contents of the file might be tool output from

[galaxy-dev] How to use the input freebayes "input_bams" to rename output

Hi all, I am a big fan of dataset renaming in my workflows, it helps a lot when you process tons of samples in parallel. I have integrated FreeBayes in a workflow but renaming the output to “#{ input_bams }.vcf” fails. I remember that when the input is a list, one needs to use some weird

Re: [galaxy-dev] Improved DRMAAJobRunner (Peter van Heusden)

Hi Peter, FYI: just found on the galaxy documentation a paragraph that even recommends running upload on the cluster: https://galaxyproject.org/admin/config/performance/cluster/ """ If your cluster nodes have Internet access (NAT is okay) and you want to run the data source tools (upload,

Re: [galaxy-dev] Improved DRMAAJobRunner (Peter van Heusden)

Dear Peter, my job_conf.xml is attached. Best, Matthuas On 08.07.2017 18:00, galaxy-dev-requ...@lists.galaxyproject.org wrote: Send galaxy-dev mailing list submissions to galaxy-dev@lists.galaxyproject.org To subscribe or unsubscribe via the World Wide Web, visit