Hi Deepak,
as Peter mentioned the Galaxy Docker container can be used as it is.
Can you provide the original error message from the TS?
Cheers,
Bjoern
On 14.08.2017 18:17, Deepak Tanwar wrote:
> I am using https://hub.docker.com/r/bgruening/galaxy-stable
>
> I aded path to the samtools because
I am using https://hub.docker.com/r/bgruening/galaxy-stable
I aded path to the samtools because I was getting error after installing
samtools from toolshed.
Thank you,
Deepak
On Aug 14, 2017, at 12:10, Peter Cock
mailto:p.j.a.c...@googlemail.com>> wrote:
Galaxy itself uses samtools for many o
Galaxy itself uses samtools for many operations, which is different
from when samtools is called as a dependency of a tool run by the
Galaxy user.
However, the Docker image ought to take care of that - can you
give more details of which Docker image you are using (URL,
version, etc)?
Thanks,
Pet
Hello everyone,
I am facing problem in uploading bam files on Galaxy. I am using Docker image
of Galaxy.
I have installed samtools version 0.1.19 and added it to the path
/tool_deps/samtools/0.1.19/iuc/package_samtools_0_1_19/c9bd782f5342/bin/samtools
Error: Exception: Attempting to use functi
