Re: [galaxy-dev] Problem with dependencies: Conda/freebayes

2018-01-11 Thread Jennifer Hillman-Jackson
Hello, Did the suggested help from Biostars help? https://biostar.usegalaxy.org/p/26197/ Thanks! Jen -- Jennifer Hillman-Jackson Galaxy Application Support http://usegalaxy.org http://galaxyproject.org http://biostar.usegalaxy.org On Wed, Jan 3, 2018 at 6:01 AM, Matthias Enders <

Re: [galaxy-dev] Problems installing conda dependencies for seq2hla tool

2018-01-11 Thread Peter Briggs
Just to follow up on my own question, in case it's helpful to anyone else: Re the specific problem with not being able to install the seq2HLA 2.2 dependency via conda: in the end I build my own version and made it available to Galaxy as "Galaxy package"

Re: [galaxy-dev] Problem with dependencies: Conda/freebayes

2018-01-11 Thread Devon Ryan
This is presumably the same question elsewhere: https://biostar.usegalaxy.org/p/26197/ -- Devon Ryan, Ph.D. Email: dpr...@dpryan.com Data Manager/Bioinformatician Max Planck Institute of Immunobiology and Epigenetics Stübeweg 51 79108 Freiburg Germany On Thu, Jan 11, 2018 at 9:44 AM, Björn

Re: [galaxy-dev] Problem with dependencies: Conda/freebayes

2018-01-11 Thread Björn Grüning
Hi Matthias, sorry for answering so late! Do you have any error message from the logs during installation? What means it is not recognised by Galaxy? Do you see the conda environment in /tool_deps/_conda/ ? Is freebayes crashing? Ciao, Bjoern Dear Galaxy Dev Mailing List, We encountered a