Re: [galaxy-dev] Looking for a running example of planemo test with options from_data_table

Dear Laure,have a look at  https://github.com/galaxyproject/tools-devteam/blob/master/tools/bowtie_wrappers/bowtie_wrapper.xml Cheers,Nicola -- Messaggio originale--Da: Laure QUINTRICData: gio 15 feb 2018 16:06A: galaxy-dev@lists.galaxyproject.org;CC: Patrick Durand;Olivier

[galaxy-dev] Looking for a running example of planemo test with options from_data_table

Dear list, Is there somewhere in the Galaxy any running example of a planemo test embracing a from_data_table option ? We are trying to reproduce the picard example referenced here:

Re: [galaxy-dev] bigwig problem

Hi Jochen, I ran in to this yesterday, we're working on fixing it right now. It's due to this: https://github.com/bioconda/bioconda-recipes/issues/5430 And because Galaxy's converters use the `ucsc_tools` IUC conda metapackage, which still points to the old versions. I have an update here:

[galaxy-dev] bigwig problem

Hi, how can I fix this problem? bedGraphToBigWig: error while loading shared libraries: libmysqlclient.so.18: cannot open shared object file: No such file or directory I have the files in the local bin but somehow it does not work inside galaxy. Thanks in advance. Cheers Jochen

Re: [galaxy-dev] Running toolshed on localhost is broken in release_17.09?

Hello Nate Thanks for looking into this so quickly - I've manually applied the patch in your PR for toolshed.yml.sample and that works perfectly, thanks! Re picking up older .ini config files for a toolshed instance: what I was doing was spinning up a completely new pair of Galaxy and toolshed