[galaxy-dev] Re: URL prefix doesn't work properly in Galaxy v18.09

2019-05-20 Thread Ping Luo
Peter, Thanks for the fix. We will try it on our galaxy. Best, Ping On Thu, May 16, 2019 at 9:01 AM Peter Briggs wrote: > Replying to my own message in case it's of use to someone else: > > It looks like this can be fixed by commenting out the 'target: > "__use_router__"' lines in

[galaxy-dev] Tagging collection datasets from file with hashtags

2019-05-20 Thread Charles Girardot
Dear all, I am trying to tag datasets with hashtags (so they propagate) with tags like #key:value . The idea is to transport information through the workflow that is used at the end of the WF by a custom tool to rename and organise datasets depending on their tags I can do this in the GUI: I

[galaxy-dev] Re: Share Docker Volumes when integrating Containers in Galaxy

2019-05-20 Thread Peter Cock via galaxy-dev
I don't have any advise from the BLAST DB side, but I would expect the same solution to work with any *.loc file and the file system it points at. Peter On Mon, May 20, 2019 at 10:50 AM Schäfer, Richard wrote: > > Hello, > > I want to integrate a Docker container as a tool in Galaxy. This works

[galaxy-dev] Share Docker Volumes when integrating Containers in Galaxy

2019-05-20 Thread Schäfer , Richard
Hello, I want to integrate a Docker container as a tool in Galaxy. This works great. However, I need the forward a Volume to the container (at least that how it works outside of Galaxy). In particular, this would be the BLAST database. This means, I would want to share the location specified