[galaxy-dev] Error with SAMTools Mpileup v1.2

Hi all, I have a galaxy instance running 18.05 version. I recently installed 'suite_samtools_1_2' (revision: 5b673ccc8747). When I used 'Mpileup' tool, I ran into the below error, and the jobs fail. Error message from UI: This job was killed when Galaxy was restarted. Please retry the job.

[galaxy-dev] inconsistent state set for workflow submissions [using bioblend]

Hi all, I have a local galaxy instance with basic configuration, and automated workflow submission to galaxy using script written with bioblend. Steps within the script: - step1: data upload - step2: dataset_collection creation - step3: workflow submission - step4: every 5 minutes,

Re: [galaxy-dev] Which ID ('id', 'workflow_id', and 'dataset_id') should be used?

Thanks for the detailed explanation Nicola! Best, Aarthi On Wed, May 17, 2017 at 6:29 PM, Nicola Soranzo <nsora...@tiscali.it> wrote: > Hi Aarthi, > thanks for your email, see my replies inline. > > On 17/05/17 08:21, Aarthi Mohan wrote: > > Hi all, > &g

[galaxy-dev] Unable to run workflow from command-line

Hi all, Aplogies for the long message! I am trying to execute a galaxy workflow from command-line using bioblend. The workflow invloves bwa, gatk, samtools mpileup, bcftools and works with dataset paired-end collections. The following is the script used to achieve it and I am unable to get the