environment.
galaxy.jobs DEBUG 2018-07-11 09:01:56,213 fail(): Moved
/home/.galaxy/database/jobs_directory/007/7553/galaxy_dataset_19326.dat to
/home/.galaxy/database/files/013/dataset_13389.dat
____________
From: Björn Grüning
Sent: 10 July 2018 08:56:37
To: Van Wageningen, GERH
Hi All - Just a quick ask - anyone have anything BAD to say about running
Galaxy on a CENTOS 7.4/Scientific Linux with AMD EPYC chipset?
Its a bit new ... but looks good on paper and we would like to grow the Galaxy
environment here.
Thanks
Gerhard
Stellenbosch IT
your input - must appreciated!
gerhard
From: Björn Grüning
Sent: 10 July 2018 08:49:04
To: Van Wageningen, GERHARD [gerha...@sun.ac.za];
galaxy-dev@lists.galaxyproject.org
Subject: Re: [galaxy-dev] Conda problems: Failed to activate conda environment
Which means
/tooldeps/_conda/envs/__trim-galore@0.4.3) [root@storage1
/home/.galaxy/tooldeps/_conda/envs]$
From: Björn Grüning
Sent: 10 July 2018 08:38:15
To: Van Wageningen, GERHARD [gerha...@sun.ac.za];
galaxy-dev@lists.galaxyproject.org
Subject: Re: [galaxy-dev] Conda
HISAT_ROOT_DIR
The conda environment with dependencies seems to be there:
/home/.galaxy/tooldeps/_conda/envs/mulled-v1-3b104c294f65450b09ba89d24826c61eddd553d789c9f1ae48a29715de1b7426/bin
Björn Grüning ;
galaxy-dev@lists.galaxyproject.org
From: Björn Grüning
: command not found
(ERR): "genome" does not exist or is not a Bowtie 2 index
Exiting now ...
From: Matthias Bernt
Sent: 06 July 2018 10:42:12
To: Van Wageningen, GERHARD [gerha...@sun.ac.za]
Cc: galaxy-dev@lists.galaxyproject.org
Subject: Re: Conda problems
_US.UTF-8"
LC_MESSAGES="en_US.UTF-8"
LC_PAPER="en_US.UTF-8"
LC_NAME="en_US.UTF-8"
LC_ADDRESS="en_US.UTF-8"
LC_TELEPHONE="en_US.UTF-8"
LC_MEASUREMENT="en_US.UTF-8"
LC_IDENTIFICATION="en_US.UTF-8"
LC_ALL=
__
Hi All
I have recently started learning the Galaxy setup starting with an upgrade.
Made some headway but I was wondering if someone could comment on a problem
that has emerged.
The system is a Galaxy 18.05 installation (upgraded from 17.01) on an Altair
PBS scheduler with drmaa setup (working)
