Hello Dave
Thanks for the quick response, that seems to have fixed it - the r-getopt conda
package installs without a problem and the readline.so.6/missing symbol error
has gone away.
(DESeq2 is failing with an R error now, but I suspect that's a separate
problem.)
Thanks again,
Best wishes
Peter,
We recently resolved a similar issue on usegalaxy.org, part of which
involved rebuilding some of deseq2's dependencies for R version 3.3.1,
which is the currently preferred version for bioconda R packages. You
should be able to get the right versions and builds of deseq2 and its
depend
Dear devs
I'm experiencing problems with the conda dependencies for the DESeq2 tool
(https://toolshed.g2.bx.psu.edu/repository?repository_id=1f158f7565dc70f9)
installed into our production instance.
When this tool is run the only output is:
/PATH/TO/job_working_directory/025/25029/conda-env/l
