Thanks John,
that's quite the detailed response.
I agree with your reasoning, and I can see the progress in planemo -- the
shed_test
command is great and I'm using it to see why some of my tool tests fail.
In this particular case there is nothing wrong with the framework though,
as the planemo
tl;dr - The devteam is planning to remove the display of those test
results from the tool shed UI and replace them with something better
hopefully by the end of 2015.
Full Details:
As Peter has documented very well over the last year, there are large
number of problems with the install and test
Hi list,
I’ve been trying to write functional tests for a tool that produces BAM
files as output. The tests run fine when using planemo locally,
but not on the testtoolshed or on machines that do not have samtools
installed.
Apparently galaxy automatically tries to convert BAM to SAM to compare
