Re: [galaxy-dev] Fwd: Failure to set attributes_type metadata for interval files / error in gff_filter_by_attribute tool

2015-05-01 Thread Dannon Baker
Hi Marius, I hope you don't mind, but I went ahead and pulled your change in as https://github.com/galaxyproject/galaxy/pull/199, since there's a bit of backport-fixing required to get this applied correctly. -Dannon On Thu, Apr 30, 2015 at 2:37 PM Dannon Baker wrote: > Hi Marius, > > It'd be

Re: [galaxy-dev] Fwd: Failure to set attributes_type metadata for interval files / error in gff_filter_by_attribute tool

2015-04-30 Thread Dannon Baker
Hi Marius, It'd be great if you wanted to submit a PR for the json issue separately -- I can confirm that that's a working fix. I'll let someone else speak to the tool change. -Dannon On Thu, Apr 30, 2015 at 2:30 PM Marius van den Beek wrote: > Hello all, > > Not sure if the mailing list or t

[galaxy-dev] Fwd: Failure to set attributes_type metadata for interval files / error in gff_filter_by_attribute tool

2015-04-30 Thread Marius van den Beek
Hello all, Not sure if the mailing list or trello would be appropriate for this. I had a problem using the gff_filter_by_attribute tool, both locally and on usegalaxy.org. Neither filtering for GTF or GFF were working. The error message was: Traceback (most recent call last): File "/home/galax