ot;C"
> Is there a flag I can set to igrore these warning and have Galaxy return
> GREEN?
> thanks.
> bob
> - Original Message -
> From: John Chilton
> To: rbrown1...@comcast.net, galaxy-dev@lists.galaxyproject.org
> Sent: Thu, 04 Feb 2016 20:11:53 - (UTC)
&g
a flag I can set to igrore these warning and have Galaxy return GREEN?
thanks.
bob
- Original Message -From: John Chilton To:
rbrown1...@comcast.net, galaxy-dev@lists.galaxyproject.orgSent: Thu, 04 Feb
2016 20:11:53 - (UTC)Subject: Re: [galaxy-dev] Fwd: Rscript run under Tools
Directo
Forgot to cc the mailing list.
-John
On Thu, Feb 4, 2016 at 8:11 PM, John Chilton wrote:
> Are you sure about the --file when calling Rscript?
>
> Here is the usage for my local version which does not expect an
> argument named --file:
>
> Usage: /path/to/Rscript [--options] [-e expr] file [args
Good morning team,
I have an Rscript tool that is trying to read a file I uploaded into the
history beforehand. Galaxy is running with the same user and privileges as the
dataset directory.
Rscript --slave --vanilla --file=$GALAXY_ROOT_DIR/tools/Foo/Foo.R
--args $inputFile1 .
Why wo
