Re: [galaxy-dev] Galaxy slurm error

2017-06-15 Thread Nate Coraor
If slurm accounting is configured, `sacct` might reveal more. You might also check the slurmd logs on the execution host where the job ran. --nate On Thu, Jun 15, 2017 at 11:47 AM, Hoover , David (NIH/CIT) [E] < hoove...@helix.nih.gov> wrote: > I would guess something about the slurm job exceede

Re: [galaxy-dev] Galaxy slurm error

2017-06-15 Thread Hoover , David (NIH/CIT) [E]
I would guess something about the slurm job exceeded some allocated resource (memory, cpu, time) and slurm killed the job. David Hoover HPC @ NIH > On Jun 15, 2017, at 11:28 AM, Nate Coraor wrote: > > Hi Evan, > > Are there any other details logged for this job? > > --nate > > On Thu, Jun 1

Re: [galaxy-dev] Galaxy slurm error

2017-06-15 Thread Nate Coraor
Hi Evan, Are there any other details logged for this job? --nate On Thu, Jun 15, 2017 at 9:20 AM, evan clark wrote: > Has anyone ever encountered an error such as this when running galaxy with > slurm and submitting files for upload and unzip. > > slurmstepd: get_exit_code task 0 died by signa

[galaxy-dev] Galaxy slurm error

2017-06-15 Thread evan clark
Has anyone ever encountered an error such as this when running galaxy with slurm and submitting files for upload and unzip. slurmstepd: get_exit_code task 0 died by signal ___ Please keep all replies on the list by using "reply all" in you