Hello John
Thanks for the prompt reply, and the heads-up re the deprecation of the
"interpreter" attribute. It looks removing this attribute from the
"command" tag fixes the linking problem, as you say.
I'll try the new idiom referencing $__tool_directory__ and let you know
if I have any iss
At first glace I think the problem is that when you use the
``interpreter`` tag Galaxy has really broken logic for modifying the
command line to use that. ln works just like cp and mv. Those too
would be broken for this tool because of the interpreter attribute I
think. For this reason ``interprete
Dear Developers
I'm currently looking at develop a tool for a local pipeline, and want
to make symlinks as part of the script in the "command" section of the
tool XML - something like e.g.
