[galaxy-dev] Pulsar - metadata staging rewrite problem

2017-05-13 Thread Poole, Richard
Hi John and all, We are running an old version of Galaxy v15.10 and use Pulsar to stage certain jobs to our hpc cluster. This works great and we love it. However, we have noticed that for certain tools which require metadata to be staged, although the metadata file is actually staged, the Galax

[galaxy-dev] Pulsar - metadata staging rewrite problem

2017-05-13 Thread Poole, Richard
Hi John and all, We are running an old version of Galaxy v15.10 and use Pulsar to stage certain jobs to our hpc cluster. This works great and we love it. However, we have noticed that for certain tools which require metadata to be staged, although the metadata file is actually staged, the Galax

Re: [galaxy-dev] Pulsar Metadata

2017-02-07 Thread John Chilton
I perhaps don't understand the question. As long as the "datasets" are Galaxy datasets and they appear in the command-line specific by the "command" block of your tool - it should be transmitted. When you say a "dataset list of files" - do you mean (1) a Galaxy collection, (2) a set of files select

[galaxy-dev] Pulsar Metadata

2017-02-02 Thread Joseph Brent Greer
Hi All, We've been using Pulsar to send jobs to our cluster on campus. Generally we send a dataset list of files over. We're wondering if there is a way to get the metadata for the files after they've been sent to the cluster. We're specifically trying to find the filepaths of the files before