[galaxy-dev] Re: Galaxy install problems

2021-07-09 Thread Luc Cornet
; , "Baurain Denis" , "Pierre Becker" , "Colignon David" Envoyé: Mercredi 30 Juin 2021 18:35:34 Objet: Re: [galaxy-dev] Re: Galaxy install problems Re, We shot down pulsar, run the playbook again, restart pulsar: We I try to launch an analysis, I have this error

[galaxy-dev] Re: Galaxy install problems

2021-06-30 Thread Luc Cornet
pGalaxy" , "Baurain Denis" , "Pierre Becker" , "Colignon David" Envoyé: Mercredi 30 Juin 2021 18:38:24 Objet: [galaxy-dev] Re: Galaxy install problems Hi Luc, you need to capitalize the first letter of slurm in your config: pulsar_yaml_config: conda_

[galaxy-dev] Re: Galaxy install problems

2021-06-30 Thread Marius van den Beek
iology > Sciensano > > - Mail original - > De: "Marius van den Beek" > À: "Luc Cornet" > Cc: "HelpGalaxy" , "Baurain Denis" < > denis.baur...@uliege.be>, "Pierre Becker" , > "Colignon David" > Envoy

[galaxy-dev] Re: Galaxy install problems

2021-06-30 Thread Luc Cornet
Luc, Luc Cornet, PhD Bio-informatician Mycology and Aerobiology Sciensano - Mail original - De: "Marius van den Beek" À: "Luc Cornet" Cc: "HelpGalaxy" , "Baurain Denis" , "Pierre Becker" , "Colignon David" En

[galaxy-dev] Re: Galaxy install problems

2021-06-30 Thread Nate Coraor
ensano > > - Mail original - > De: "Nate Coraor" > À: "Luc Cornet" > Cc: "HelpGalaxy" , "Baurain Denis" < > denis.baur...@uliege.be>, "Pierre Becker" , > "Colignon David" > Envoyé: Mercredi 30 Juin

[galaxy-dev] Re: Galaxy install problems

2021-06-30 Thread Marius van den Beek
is" < > denis.baur...@uliege.be>, "Pierre Becker" , > "Colignon David" > Envoyé: Mercredi 30 Juin 2021 16:44:50 > Objet: Re: [galaxy-dev] Re: Galaxy install problems > > If you've set up pulsar to start as a systemd service you should get the

[galaxy-dev] Re: Galaxy install problems

2021-06-30 Thread Luc Cornet
us van den Beek" À: "Luc Cornet" Cc: "HelpGalaxy" , "Baurain Denis" , "Pierre Becker" , "Colignon David" Envoyé: Mercredi 30 Juin 2021 16:44:50 Objet: Re: [galaxy-dev] Re: Galaxy install problems If you've set up pulsar to start as a sy

[galaxy-dev] Re: Galaxy install problems

2021-06-30 Thread Luc Cornet
ot;Pierre Becker" , "Colignon David" Envoyé: Mercredi 30 Juin 2021 16:50:13 Objet: [galaxy-dev] Re: Galaxy install problems On Wed, Jun 30, 2021 at 10:30 AM Luc Cornet < [ mailto:luc.cor...@uliege.be | luc.cor...@uliege.be ] > wrote: Dear Marius, Many thank for your fee

[galaxy-dev] Re: Galaxy install problems

2021-06-30 Thread Nate Coraor
- > Luc Cornet, PhD > Bio-informatician > Mycology and Aerobiology > Sciensano > > - Mail original - > De: "Marius van den Beek" > À: "Luc Cornet" > Cc: "HelpGalaxy" , "Baurain Denis" < > denis.baur...@uliege.b

[galaxy-dev] Re: Galaxy install problems

2021-06-30 Thread Suderman Keith
p_publish_retry_interval_max: 60 > > > Thanks for your help, > Luc > > > > Luc Cornet, PhD > Bio-informatician > Mycology and Aerobiology > Sciensano > > - Mail original - > De: "Marius van den Beek" > À: "Luc C

[galaxy-dev] Re: Galaxy install problems

2021-06-30 Thread Marius van den Beek
den Beek" > À: "Luc Cornet" > Cc: "HelpGalaxy" , "Baurain Denis" < > denis.baur...@uliege.be>, "Pierre Becker" , > "Colignon David" > Envoyé: Mercredi 30 Juin 2021 16:32:16 > Objet: [galaxy-dev] Re: Galaxy install

[galaxy-dev] Re: Galaxy install problems

2021-06-30 Thread Luc Cornet
; , "Baurain Denis" , "Pierre Becker" , "Colignon David" Envoyé: Mercredi 30 Juin 2021 16:32:16 Objet: [galaxy-dev] Re: Galaxy install problems Thanks, but these are not the pulsar application logs. Can you provide these please ? On Wed, 30 Jun 2021 at 16:30, Luc Co

[galaxy-dev] Re: Galaxy install problems

2021-06-30 Thread Marius van den Beek
Cornet, PhD >> Bio-informatician >> Mycology and Aerobiology >> Sciensano >> >> - Mail original - >> De: "Marius van den Beek" >> À: "Luc Cornet" >> Cc: "HelpGalaxy" , "Baurain Denis" < >> den

[galaxy-dev] Re: Galaxy install problems

2021-06-30 Thread Marius van den Beek
"Marius van den Beek" > À: "Luc Cornet" > Cc: "HelpGalaxy" , "Baurain Denis" < > denis.baur...@uliege.be>, "Pierre Becker" , > "Colignon David" > Envoyé: Mercredi 30 Juin 2021 16:02:04 > Objet: [galaxy-dev] Re: G

[galaxy-dev] Re: Galaxy install problems

2021-06-30 Thread Luc Cornet
"HelpGalaxy" , "Baurain Denis" , "Pierre Becker" , "Colignon David" Envoyé: Mercredi 30 Juin 2021 16:02:04 Objet: [galaxy-dev] Re: Galaxy install problems Hi Luc, I'm sorry to hear that you're struggling to set up Galaxy to your liking. Let me start

[galaxy-dev] Re: Galaxy install problems

2021-06-30 Thread Marius van den Beek
Hi Luc, I'm sorry to hear that you're struggling to set up Galaxy to your liking. Let me start by pointing out that usegalaxy.org uses slurm with DRMAA, this is certainly going to be more performant and reliable than the CLI plugin. There is little maintenance necessary, so maybe that is why activ