That seems a good compromise within conda, since BioConda
wouldn't want the binary package itself to be too big.
(I'm doing something similar with some real sample data for
a tool, putting it up on Zenodo. Of course, this is optional for
my tool - your use case is different.)
The Galaxy Data Mana
Hi Bjoern,
Thank you for your direction and information. The post-link script is
exactly what I was looking for. I am glad I asked the question here.
Thank you.
Best regards,
Jin
On Wed, Jul 24, 2019 at 3:26 PM Björn Grüning wrote:
>
> Hi Jin,
>
> you can use a post-link script in conda.
>
> Li
Hi Jin,
you can use a post-link script in conda.
Like here:
https://github.com/bioconda/bioconda-recipes/blob/master/recipes/picrust2/post-link.sh
This way the data can be fetch during tool installation.
See more information here:
https://docs.conda.io/projects/conda-build/en/latest/resourc
Hi Brad,
Thank you for your quick reply. I can put the data file to Zenodo so
that I will have a permanent location for it.
As for re-computing the data file locally, it may need several days to
run, so it may be quite inefficient to do the computing. I am
expecting an automatic download of the d
Hi:
I’d be concerned about that file changing or disappearing and causing
irreproducibility.
If the URL were to a permanent location (e.g. NCBI or zenodo) maybe it’s ok.
Could it be re-computed locally if necessary (like a genome index)?
Maybe others know of examples where this is done.
Brad
