Re: [galaxy-dev] Spaces in GenomeSpaces file URLs from genomespace_importer tool

2015-10-21 Thread Peter Cock
See: https://trello.com/c/YBK8ZPFb/ Hopefully one of the Galaxy team can take a look. Peter On Wed, Oct 21, 2015 at 3:48 PM, Marco Ocana wrote: > Thanks for you help Peter. > I have reported the problem using the built in Galaxy reporting tool from > one of my failed

Re: [galaxy-dev] Spaces in GenomeSpaces file URLs from genomespace_importer tool

2015-10-21 Thread Peter Cock
Hi Marco, I'd lay money on the the tool parameter sanitization done in Cheetah intended to avoid any command insertion into the shell command. This can be configured within the tool definition using the tag set: