Re: [galaxy-dev] Conda problem

er I deleted these directories > the error messages disappeared and tools are running again. > > > Cheers, David > > > From: Peter Cock <p.j.a.c...@googlemail.com> > Sent: 24 May 2018 14:22:40 > To: David Lee > Cc: galaxy-dev

Re: [galaxy-dev] Conda problem

/pkgs/. After I deleted these directories the error messages disappeared and tools are running again. Cheers, David From: Peter Cock <p.j.a.c...@googlemail.com> Sent: 24 May 2018 14:22:40 To: David Lee Cc: galaxy-dev@lists.galaxyproject.org Subject: Re: [gala

Re: [galaxy-dev] Conda problem

On Thu, May 24, 2018 at 2:14 PM, David Lee wrote: > Hi, > > > I hope somebody can help me with this. I've been maintaining a Galaxy > installation for the past few months that has suddenly developed a problem > that I can't undo. Which version of Galaxy? Can you tell

[galaxy-dev] Conda problem

Hi, I hope somebody can help me with this. I've been maintaining a Galaxy installation for the past few months that has suddenly developed a problem that I can't undo. I think it occurred after installing samtools and sambamba packages which I have subsequently uninstalled but which has made

Re: [galaxy-dev] conda problem

Hi Bjoern, thanks for the information. Then I will check for a new version next week and check if the problem is gone. Have a great weekend. Cheers, Matthias On 31.08.2017 18:24, Björn Grüning wrote: Hi Matthias, conda-build only supported 80 chars limit for a long time. This has fixed

Re: [galaxy-dev] conda problem

Hi Matthias, conda-build only supported 80 chars limit for a long time. This has fixed and all new packages don't have this problem. So hopefully this PR will fix it: https://github.com/bioconda/bioconda-recipes/pull/5912 Cheers, bjeorn On 31.08.2017 17:19, Matthias Bernt wrote: > Dear list,

[galaxy-dev] conda problem

Dear list, When running rmarkdown_wgcna I get the following error in the logs: PaddingError: Placeholder of length '80' too short in package bioconda::r-wgcna-1.51-r3.3.1_0. The package must be rebuilt with conda-build > 2.0. The command that seems to lead to this is: Executing command:

[galaxy-dev] conda problem with R libraries

Hi all, I'm testing a tool with planemo and the conda dependencies are not running: r-base r-ggfortify r-getoptlong galaxy.jobs.handler INFO 2017-07-04 13:11:42,935 (2) Job dispatched galaxy.util.object_wrapper WARNING 2017-07-04 13:11:43,062 Unable to create dynamic subclass for , None: