Re: [galaxy-dev] drmaa job status

2017-06-16 Thread Matthias Bernt
Dear Nate and Curtis, I read a bit in the documentation of the python and underlying C library.. and played a bit around. I can't speak for GridEngine's specific behavior because I haven't used it in a long time, but it's not surprising that jobs "disappear" as soon as they've exited.

Re: [galaxy-dev] drmaa job status

2017-06-15 Thread Hendrickson, Curtis (Campus)
hias Bernt Sent: Thursday, June 15, 2017 9:27 AM To: galaxy-dev@lists.galaxyproject.org Subject: [galaxy-dev] drmaa job status Dear list, I have two question for all DRMAA users. Here is the first one. I was checking how our queuing system (univa GridEngine) and Galaxy react if jobs are submitted t

Re: [galaxy-dev] drmaa job status

2017-06-15 Thread Nate Coraor
Hi Matthias, I can't speak for GridEngine's specific behavior because I haven't used it in a long time, but it's not surprising that jobs "disappear" as soon as they've exited. Unfortunately, Galaxy uses periodic polling rather than waiting on completion. We'd need to create a

[galaxy-dev] drmaa job status

2017-06-15 Thread Matthias Bernt
Dear list, I have two question for all DRMAA users. Here is the first one. I was checking how our queuing system (univa GridEngine) and Galaxy react if jobs are submitted that exceed run time or memory limits. I found out that the python drmaa library cannot query the job status after the