Hello all,
I am a new Galaxy admin/developer, so if this is as stupid question please
be kind.
I am trying to add the ability for a user to choose additional parameters
for Tophat for Illumina. After analyzing the Python and XML files
in /galaxy-dist/tools/ngs_rna, I came to the conclusion that
Hello Scott,
the tool named 'tophat' has been migrated out of distribution to the Tool
Shed over a year ago. Which means that if it is in your Galaxy and your
Galaxy is newer than a year it must have been installed from the Tool Shed.
Tool Shed acts like an app store for Galaxy Tools.
The tophat
I was trying to track down why an attempt to test my tool is eventually failing
with:
ValueError: No such test TestForTool_ffp_phylogeny
In my case the tool code is located in a Galaxy's tool shed folder, so I'm
guessing that might have something to do with it? Has someone come up with a
Hi Scott
and just double checking, in case you do have an 'old' Galaxy installation:
after modifying the xml file (I assume you are talking about
tophat_wrapper.xml?): Have you re-loaded the tool?
click on 'Reload a tool's configuration' on the administration menu and
select the tool
