Re: [galaxy-dev] How to access the api by jQuery ajax?

2015-06-04 Thread Yanbo Ye
Hi Eric, Yes, you are right. The REMOTE_USER was stripped out by apache. After setting it in the header of the proxy config, now it works perfect. For uploading, currently all files are uploaded by an admin user and assigned to common users. don't know if any other problems there. Thanks for your

Re: [galaxy-dev] Sending tool output to input parameters of downstream tool(s)

2015-06-04 Thread Alexander Vowinkel
Hi, I'd like to refer to an old post I found in the archive [1] and ask if there has been some progress in this? Best, Alexander [1] http://dev.list.galaxyproject.org/Sending-tool-output-to-input-parameters-of-downstream-tool-s-tt4663398.html Hi all, I was recently wondering how it might

Re: [galaxy-dev] Problem in Json datatype?

2015-06-04 Thread John Chilton
Thanks for the detailed bug report Keith! I have implemented Peter suggestion as a Pull Request (https://github.com/galaxyproject/galaxy/pull/309). -John On Thu, Jun 4, 2015 at 3:34 AM, Peter Cock p.j.a.c...@googlemail.com wrote: Good idea - the Python file read method takes an option number

[galaxy-dev] filtering html tables in a history item

2015-06-04 Thread Rose Mark USRE
Hello Here is what I would like to do. Any suggestions are appreciated. I have a history item that is an html page with an html table. This table has a checkbox on the end of each table row. I would like it if a user could check which rows he would like to keep and then be able to filter

Re: [galaxy-dev] Functional Test Failures with 15.05

2015-06-04 Thread Martin Čech
Hello Ryan, the recommended way to leverage tests included with Galaxy is to run individually the subsets you are interested in. The syntax can be found here: https://wiki.galaxyproject.org/Admin/RunningTests I can confirm that fresh checkout of -dev with 'sh run_tests.sh' (which runs only