Re: [galaxy-dev] pbs_python can't be installed via scramble

2015-09-23 Thread Will Holtz
Hi Makis, The thread I posted does have the exact same container.hpp error and proposes a solution. Did you try setting your PBS_PYTHON_INCLUDEDIR to point to your torque/include directory, as mentioned in that thread? from the thread: export PBS_PYTHON_INCLUDEDIR=/usr/local/torque/include/

Re: [galaxy-dev] Galaxy on a Cluster -- Active Directory LDAP configuration

2015-09-23 Thread Carlos Lijeron
Good day Nicola, Thank you for the advise on LDAP authentication. Did you need to run Galaxy on Apache to enable this, or did you simply change some configuration files to enable this. I think we’ll be able to write some scripts using SLURM commands to pull data about resource utilization,

Re: [galaxy-dev] Galaxy on a Cluster -- Active Directory LDAP configuration

2015-09-23 Thread Carlos Lijeron
David, Thank you for the valuable feedback. I will look into the galaxy-pulsar server app and determine how we can implement it to connect our galaxy instance to the working nodes. Perhaps I’ll direct a few relevant questions while we get on board with the implementation, if you don’t mind.

[galaxy-dev] Galaxy Interactive Environment devs

2015-09-23 Thread Eric Rasche
Howdy y'all, I'm building some changes to the IE infrastructure that will fix some initial hacks we did, however they will be backwards incompatible. Specifically these changes will fix some of the enterprise deployment pains (running with an external upstream proxy like apache) and allow for

Re: [galaxy-dev] Running Galaxy on a cluster with SLURM ?

2015-09-23 Thread Sven E. Templer
Hi Carlos, next steps might include: * install slurm drmaa http://apps.man.poznan.pl/trac/slurm-drmaa e.g. curl -#o slurm-drmaa-1.0.7.tar.gz http://apps.man.poznan.pl/trac/slurm-drmaa/downloads/9 tar -xf slurm-drmaa-1.0.7.tar.gz cd slurm-drmaa-1.0.7 p=$(which srun)