Re: [galaxy-dev] Potential Hackathon proposal: RADSeq

2015-11-24 Thread Gildas Le Corguillé
Hi All, I have some knowledges about RADSeq ... at least about the bioinformatics part. This technology is growing up in my lab (marine science) and I'm involve in few of those projects. So I'm in! Gildas Le 23/11/2015 20:59, Tiago Antao a écrit : On Mon, 23 Nov 2015 18:03:05 + John

Re: [galaxy-dev] Potential Hackathon proposal: RADSeq

2015-11-24 Thread Gildas Le Corguillé
The same for me, I have another Hackathon ^^' the 14-16th of march. Anyway, I can take part through the GitHUB. Gildas Le 24/11/2015 10:38, mabernard a écrit : Dear all, I work on many RADSeq projects, and I'm using Stacks for doing this. I developpe(d) some scripts to describe the result,

[galaxy-dev] tool data_column param issue under workflow mode

2015-11-24 Thread FGiacomoni INRA
Dears, We observed this issue under galaxy release 15.07. Tools with a param tag and type="data_column" in their xml file are impossible to set on a workflow "run" mode. The value of the column stay at "column 1" or void even if your tabular file has more than one column. The setting of the to

Re: [galaxy-dev] Potential Hackathon proposal: RADSeq

2015-11-24 Thread mabernard
Dear all, I work on many RADSeq projects, and I'm using Stacks for doing this. I developpe(d) some scripts to describe the result, compute descriptive statistics So I'm really interested to participate to this Hackathon, to give autonomy to biologist. So I'm in to but not at the date

[galaxy-dev] Does anybody know if ts (a task scheduler) is supported under Galaxy.

2015-11-24 Thread Shane Kelly
Hi, I am looking for a simple task scheduler to use with Galaxy and initially picked Torque, but since my server is a single box, Torque would appear to be overkill? Can I have any input from anyone who may have used it? Thanks for any response

Re: [galaxy-dev] Does anybody know if ts (a task scheduler) is supported under Galaxy.

2015-11-24 Thread Björn Grüning
Hi Shane, would Slurm work for you? http://slurm.schedmd.com/ Cheers, Bjoern Am 24.11.2015 um 13:12 schrieb Shane Kelly: > Hi, > I am looking for a simple task scheduler to use with Galaxy and > initially picked Torque, but since my server is a single box, Torque > would appear to be over

Re: [galaxy-dev] Does anybody know if ts (a task scheduler) is supported under Galaxy.

2015-11-24 Thread Eric Rasche
I'd also recommend HTCondor. Very easy to set up on debian/ubuntu, apt-get has a quick questionnaire that gets you up and running. Cheers, Eric On 11/24/2015 11:46 AM, Björn Grüning wrote: > Hi Shane, > > would Slurm work for you? > > http://slurm.schedmd.com/ > > Cheers, > Bjoern > > Am 24.11.2

Re: [galaxy-dev] Potential Hackathon proposal: RADSeq

2015-11-24 Thread Tiago Antao
On Tue, 24 Nov 2015 10:38:05 +0100 mabernard wrote: > So I'm in to but not at the date you propose sorry. > Is the possible the week before (between 7th and 11th) or 2 weeks > later (between 29th to 1st)? What about the 7th and 8th (March)? Is this OK for everybody? Thanks, Tiago __

Re: [galaxy-dev] Potential Hackathon proposal: RADSeq

2015-11-24 Thread Björn Grüning
Am 24.11.2015 um 20:36 schrieb Tiago Antao: > On Tue, 24 Nov 2015 10:38:05 +0100 > mabernard wrote: > >> So I'm in to but not at the date you propose sorry. >> Is the possible the week before (between 7th and 11th) or 2 weeks >> later (between 29th to 1st)? > > What about the 7th and

Re: [galaxy-dev] Potential Hackathon proposal: RADSeq

2015-11-24 Thread Tiago Antao
> What about a github issue and a doodle link? I want to contact a couple of people before the github issue. That will be ready tomorrow. WRT doodle, a question: do you folks think 2 days is the correct duration? I do not have an opinion myself, but is that a sensible default (as the metagenomics

Re: [galaxy-dev] Potential Hackathon proposal: RADSeq

2015-11-24 Thread Björn Grüning
Am 24.11.2015 um 21:02 schrieb Tiago Antao: >> What about a github issue and a doodle link? > > I want to contact a couple of people before the github issue. That will > be ready tomorrow. > > WRT doodle, a question: do you folks think 2 days is the correct > duration? I do not have an opinion

[galaxy-dev] RAD-Seq Hackathon: Doodle pool

2015-11-24 Thread Tiago Antao
Hi, I have created a doodle pool for the Hackathon: http://doodle.com/poll/hcc83a4yzgnecq4w It spawns 2-days across the month of March (Starting on Mondays or Thrusdays). It has the If-Need-Be option. A note (probably to Yvan and maybe others): Note that this doodle is only going out to people