Hi:
I just tried to install khmer from the toolshed.
I don’t think it’s installing correctly - but I don’t know if it’s a tool
problem or something with my setup.
the tool-dep directory has
khmer/2.0/crusoe/package_khmer_2_0/c7702a7d26e8/
but it’s empty.
This tool has a package dependency like this:
<?xml version="1.0"?>
<tool_dependency>
<package name="khmer" version="2.0">
<install version="1.0">
<actions>
<action type="setup_python_environment">
<repository changeset_revision="5caf592bb259" name="package_python_2_7"
owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu";>
<package name="python" version="2.7" />
</repository>
<package>https://pypi.python.org/packages/source/k/khmer/khmer-2.0.tar.gz#md5=1f610abd021254e21b082179a100cd39</package>
</action>
</actions>
</install>
</package>
</tool_dependency>
what does that fragment tag mean?
How does this work.
Do I have to set up something to deal with making a python environment?
It also uses this @BINARY@ variable that I have not seen before. galaxy search
for ‘@BINARY@‘ turns up nothing.
Can anybody point me in the right direction here?
Thanks!
Brad
—
Brad Langhorst, Ph.D.
Development Scientist
New England Biolabs
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