Re: [galaxy-dev] Workflow bug when *.loc entries are missing

2015-04-01 Thread Saket Choudhary
On 1 April 2015 at 02:06, Peter Cock p.j.a.c...@googlemail.com wrote: On Tue, Mar 31, 2015 at 6:12 PM, John Chilton jmchil...@gmail.com wrote: I think it is probably a pair of bugs you are seeing: Having tried the revert, yes, I think so too. The wrong database being selected is probably

Re: [galaxy-dev] Workflow bug when *.loc entries are missing

2015-04-01 Thread Peter Cock
On Wed, Apr 1, 2015 at 11:29 AM, Saket Choudhary sake...@gmail.com wrote: On 1 April 2015 at 02:06, Peter Cock p.j.a.c...@googlemail.com wrote: On Tue, Mar 31, 2015 at 6:12 PM, John Chilton jmchil...@gmail.com wrote: I think it is probably a pair of bugs you are seeing: ... The fix

Re: [galaxy-dev] Using synchronous method to upload multiple files

2015-04-01 Thread Daniele P Colobraro
Thanks John for your help, if I get it will I set just a external view of my files? My idea is to provide multiple files in the galaxy history. I tried to rewrite the 'galaxy.joson' file but without results. So far, I have made up just the tool below: upload3.py $report1 $report1.id

[galaxy-dev] Installing workflows from the Tool Shed is very confusing

2015-04-01 Thread Peter Cock
Hello all, I've been playing with the Tool Shed lately for publishing Galaxy workflows - and realised the download process is still very complicated, especially the final hurdle - importing the workflow in order to actually use it. For the following example I am starting from a clean state - an

[galaxy-dev] Multiple outputs of unknown types

2015-04-01 Thread David Kelly
Hello, I've looked through the documentation about tools that produce multiple output files, but it seems like you're required to know the data types ahead of time (or make assumptions based on input data). But what about a case where you don't know what the output datatypes will be? Is it just

Re: [galaxy-dev] dat quota

2015-04-01 Thread Dannon Baker
Hey Charles, This was an error on our end (bug that has since been fixed), and I've recalculated your quota. You should be good to go now. Thanks for using Galaxy! -Dannon On Thu, Mar 26, 2015 at 8:21 AM, Williams, Charles Houston charles.williams...@vanderbilt.edu wrote: After reading