Hi Damion,
The NCBI have a bug here - if it is just a warning, it shouldn't
say Error. We had something similar before:
Error: (1431.1) FASTA-Reader: Warning: FASTA-Reader: Ignoring FASTA
modifier(s) found because the input was not expected to have any.
In that case the NCBI fixed it, see
On Sat, Jul 4, 2015 at 5:09 PM, Dooley, Damion damion.doo...@bccdc.ca wrote:
Sure I could probably step up to the plate on that one. I haven't
reported it to NCBI - it didn't twig that this was an exit code 0 .
I'll sneak it into BOSC codefest maybe!
d.
What is the error code? It might
Makeblastdb can spit out warning notices when a higher count of N ambiguous
nucleotides occurs in the first row of fasta data, but goes ahead and completes
the blast database.
Error: (1431.1) FASTA-Reader: Warning: FASTA-Reader: First data line in seq is
about 45% ambiguous nucleotides
