Hi Keith,
how is the NLP category working for you? Do you want it on Main Tool Shed?
Also I have noticed you are putting the version of your tools in the
repository names. I would like to discourage that as it will create
confusion once you update your tool (as you will be unable to update the
Hi Léo,
maybe you can use a dataset collection instead. This is a new way to
handle multiple datasets of the same type.
For an example see this tool:
https://github.com/bgruening/galaxytools/blob/master/tools/rna_tools/rna_shapes/RNAShapes.xml#L218
Cheers,
Bjoern
On 10.09.2015 23:01, Léo
Hi,
are you running fastqc on the compressed tarfile? Or is this file
unpacked already when you are running fastqc on it?
Thanks,
Bjoern
On 10.09.2015 09:39, Hakeem Almabrazi wrote:
Hi,
I have encountered the following issue when I try to use FastQC tool
in Galaxy. The fastqc file is
Hi Bjoern,
I'll try to use collections and return soon. I could not find the tag of
the documentation [1], has any record in the documentation about it?
[1] https://wiki.galaxyproject.org/Admin/Tools/ToolConfigSyntax
Thanks for the reply.
Att.
On Fri, Sep 11, 2015 at 5:42 AM, Bjoern Gruening
Hi,
I configure authentication with the LDAP (Active Directory) of my
compagny. But the username (sAMAccoutName) contains a dot (eg :
e.hirchaud).
And that was a problem because the dot is not allow in galaxy username
and auto-registration fails because of that.
For testing I change the
Hi again,
After struggling with this issue for few days and exhausted all my options, the
only thing that was left was to use the "Copy the file into galaxy" instead of
"Link files into Galaxy" in the loading page. It took while to copy but after
it was done, I noticed the file was
Hello Galaxy Devs and Deployers!
I have a rather basic question about how to handle custom tools in Galaxy
(I'm fresh to this framework). I am trying to link my local Galaxy with
KNIME workflow that we developed in our group. I am trying to link it via a
bash script that is running headless
Hi Piotr,
I guess you need to work a lot with symlinks.
link all your Galaxy inputs to a temp folder, provide the path to the
temp folder to KNIME + a path to a second tempfolder with the results
and tell Galaxy to collect all files int the result folder.
Cheers,
Bjoern
On 11.09.2015
