I agree that it would be very nice to get the data flowing between each
of the tools and to be able to mix/match with other tools. That is an
area of Galaxy tool-dev that I'm less familiar with, so any help would
be greatly appreciated.
As for the manual massaging, I agree, however, at this
i finally got Cairo installed into R inside galaxy.
As well as cairo needing fontconfig to add cairo into R also requires libmxl2
I also changed the R install.
1. Never use the zip as it has hard coded environment variables in it
2. The set_environment variable in the R install to "prepend_to"
Hi Christian,
what is needed from the TS site? Do you have any changes that are needed
in the cairo package or R package?
For me everything is now working and the only thing you need to do is to
specify the Rcairo tarball in your tool_dependendy file. Like here:
HI Bjorn,
I now see you are bringing in libmxl2 in dexseq.
As this is needed by various R packages and already installed by fontconfig
would it be worth making it a first class dependency of package_r_3_2_1
I also see that in dexseg you specifically say "libxml2 needs to be sourced
after R"
Dear All,
is it possible to get any help in a subject of pbs_python problems?
Especially Galaxy crash related to this issue.
Let me remind:
I encountered exactly the same problem:
http://osdir.lowified.com/galaxy-development-source-control/2012-07/msg00132.html
However my Galaxy instance
Hi Lance,
I looked at this a bit ago and had similar concerns, particularly with the
outputs and inputs not being well-defined. In addition to the output tar ball
—> local, extract —> upload not being great, as you mention, the input
datatypes, etc, could use some work — in the very least, we
