Re: [galaxy-dev] FW: Galaxy on Centos via Apache - connection refused

2015-11-03 Thread Makis Ladoukakis
Also when I tried to run it without the addition of port 8081 in apache configuration file (when all I saw was a blank page) the error in /var/log/httpd/error_log was the following: AH01276: Cannot serve directory /var/www/html/: No matching DirectoryIndex (index.html,welcome.html,index.php)

Re: [galaxy-dev] tool-shed delete problem

2015-11-03 Thread Kucukural, Alper
No, I am trying to upload the right files but I cannot delete the wrong files there. > On Nov 3, 2015, at 2:30 AM, Björn Grüning wrote: > > Hi Alper, > > there is no option to delete a repository, but you can deprecate one. Is > this what you are trying? > >

Re: [galaxy-dev] Galaxy on Centos via Apache - connection refused

2015-11-03 Thread Suderman Keith
Very odd that you were getting “Address is use” errors then.. What have you set the port to in your galaxy.ini file? The missing index.html/index.php won’t make a difference to Galaxy, but it might prevent Apache from starting up. I would put a simple index.html file, say: You should not

Re: [galaxy-dev] atlas 3.10 IUC error

2015-11-03 Thread o.claude
Hi Nicola It is an i686. Is it a problem ? Cheers, Olivier De : Nicola Soranzo Envoyé : mardi 3 novembre 19:08 Objet : Re: [galaxy-dev] atlas 3.10 IUC error À : Olivier CLAUDE, 'galaxy-dev' Hi Olivier, what are your operating system and architecture (x86_64 or i386)? Cheers,

Re: [galaxy-dev] atlas 3.10 IUC error

2015-11-03 Thread Peter Cock
On Tue, Nov 3, 2015 at 6:16 PM, wrote: > Hi Nicola > > It is an i686. Is it a problem ? > > Cheers, > Olivier Currently only for 64bit Linux are pre-compiled binaries used:

Re: [galaxy-dev] atlas 3.10 IUC error

2015-11-03 Thread Nicola Soranzo
Peter is correct, can you open an issue at https://github.com/galaxyproject/tools-iuc/issues/new and ping @natefoo ? Thanks, Nicola On 03/11/15 18:23, Peter Cock wrote: On Tue, Nov 3, 2015 at 6:16 PM, wrote: Hi Nicola It is an i686. Is it a problem ? Cheers, Olivier

Re: [galaxy-dev] FW: Galaxy on Centos via Apache - connection refused

2015-11-03 Thread Federico Zambelli
Il 03/11/15 11:53, Makis Ladoukakis ha scritto: Nothing seems to work on my server. Is Galaxy even compatible with CentOS? Is there something else that I am missing? Hello, I'm running a production Galaxy Server on CentOS and I can assure you it is perfectly feasible. But I'm using NGINX

Re: [galaxy-dev] FW: Galaxy on Centos via Apache - connection refused

2015-11-03 Thread Makis Ladoukakis
So I disabled SELinux But that didn't make any difference. While the run.sh runs I still can't see anything but a blank page. When I changed my apache configuration to include port 8081, the script didn't even run producing the error: Traceback (most recent call last): File