[galaxy-dev] BLAST only using single core

2016-07-20 Thread Shane Sturrock
Previously, the BLAST wrapper was able to use multiple cores but recently users have started complaining it has got really slow and when I look at the cluster a job is only using a single core. I don’t want jobs split across multiple cluster nodes, but each node has 16 cores so it would be good

Re: [galaxy-dev] Galaxy, Docker Containers, and Installing tools not in Toolshed

2016-07-20 Thread Björn Grüning
Hi, > Hello Bjoern, > > Thanks for the quick response, I appreciate that. > > Concerning the instructions, I am unclear of a couple of things. > > I have a folder with my tools, there is no preinstalled folder that > these tools need to go in called my_tools_folder, right? No, you can create

Re: [galaxy-dev] Galaxy, Docker Containers, and Installing tools not in Toolshed

2016-07-20 Thread Yip, Miu ki
Hello Bjoern, Thanks for the quick response, I appreciate that. Concerning the instructions, I am unclear of a couple of things. I have a folder with my tools, there is no preinstalled folder that these tools need to go in called my_tools_folder, right? Additionally, would I place this tool

Re: [galaxy-dev] Fwd: New galaxy parameter type

2016-07-20 Thread Mohamed Kassam
Dear all, I did not want to open a new subject, because I have the same problem. I tried to follow what is was described here https://github.com/galaxyproject/galaxy/pull/393, I add the lines a described in the github, but when I am clicking to my tool I got [image: Images intégrées 1] And if i