[galaxy-dev] Galaxy history UI suggestion

2016-08-02 Thread Bongsoo Park
Hello, In the saved histories, the selected page goes to the first page all the times. I think it is not convenient. Let's say I want to browse the histories in page 17. (maybe 20 histories are there). I had to click again the page 17 (button navigation) if I want to browse another history in

Re: [galaxy-dev] Galaxy Blast

2016-08-02 Thread Peter Cock
Cross referencing this open issue which looks like the same thing: https://github.com/peterjc/galaxy_blast/issues/80 We're probably going to return the BLAST datatypes to the Galaxy core, which will resolve this in a different way:

Re: [galaxy-dev] Possible bug in drmaa and Galaxy?

2016-08-02 Thread Nicola Soranzo
Hi Ray, I don't see anything strange in the Galaxy logs. The job on the cluster "finished normally" just means that it completed its execution without being killed by the cluster scheduler or for other external reasons. The second line in the logs is telling you that Galaxy has seen that the

Re: [galaxy-dev] Add url in help of tool xml

2016-08-02 Thread Peter Cock
Great - I'm glad it was an easy fix. Peter On Tue, Aug 2, 2016 at 10:36 AM, Mohamed Kassam wrote: > Hell Peter > The CDATA works perfectly thanks again. > > Mohamed > > 2016-08-02 11:31 GMT+02:00 Peter Cock : >> >> This could be as simple as the &

Re: [galaxy-dev] Add url in help of tool xml

2016-08-02 Thread Peter Cock
This could be as simple as the & needing to be escaped as or better escaping the whole help text using CDATA: https://galaxy-iuc-standards.readthedocs.io/en/latest/best_practices/tool_xml.html#help-tag Can you show us your tool XML file? Is it on GitHub? Peter On Tue, Aug 2, 2016 at 10:26 AM,