Re: [galaxy-dev] Tool needs a particular file extension -- now Datatype help

Thanks all, it seems that my real problem is that the audio file (.wav) is not being identified as a valid datatype and ending up as a zero length text file. So, I need to start to explore the world of datatypes. Following the docs

[galaxy-dev] Local Galaxy Workflow Sharing

Hi, I am looking to share a workflow I've created in Local Galaxy with an individual user via email address - where they will access the workflow on main galaxy. When I select 'Share/Download' the following error message appears: [cid:59dde9c4-0f20-4cb6-9c14-1875f09657c4] I'd really

Re: [galaxy-dev] Tool needs a particular file extension

Using a soft link for this is a common pattern, and should be followed with && (ideally using XML CDATA to avoid escaping everything like etc), and quote the filenames just in case there are any spaces. e.g.

Re: [galaxy-dev] Tool needs a particular file extension

Hi Steve, try do like this example [1] [1] https://github.com/leobiscassi/autodock_vina_tools/blob/dev/tools/prepare_ligand/prepare_ligand.xml Cheers, On Fri, Oct 21, 2016 at 2:48 PM Steve Cassidy wrote: > Hi, > I’m wrapping a tool that needs it’s input to have a

[galaxy-dev] Tool needs a particular file extension

Hi, I’m wrapping a tool that needs it’s input to have a known file extension (an audio file, eg. .wav). Since Galaxy stores all data as .dat files the tool is falling over since it doesn’t know what .dat is. I thought I’d be able to get around this by hard linking the .dat file to the same

Re: [galaxy-dev] Changing Tool Shed URL

Thank you very much for sharing Youssef. Very helpful. Martin On Fri, Oct 21, 2016 at 10:20 AM Youssef GHORBAL wrote: > Hello, > > Two other tables need to be adapated (they reference tool_id) > Table “job" and table “workflow_step” > > Youssef

Re: [galaxy-dev] Changing Tool Shed URL

Hello, Two other tables need to be adapated (they reference tool_id) Table “job" and table “workflow_step” Youssef Ghorbal Institut Pasteur - > On 21 Oct 2016, at 00:36, Youssef Ghorbal wrote: > > Hello, > > What worked