[galaxy-dev] Restart Galaxy without interruption

2016-11-14 Thread Gildas Le Corguillé
Hi, Since Galaxy need to be restarted sometime (load datatype, add ressources in .loc, apply changes in the galaxy.ini), is anybody of you have solutions to restart it without interrupt the service? We are now using nginx, uwsgi and supervisord. My hope is to split the Galaxy process in two

Re: [galaxy-dev] purge dataset at a different location

2016-11-14 Thread Dannon Baker
Hi Mark, I'm not sure this is something I'd encourage pursuing for most folks, but I understand that custom deployments may need special functionality. To implement this for your Galaxy instance, you'd want to look at the ObjectStore "delete" functions, here:

Re: [galaxy-dev] Galaxy on the Cloud with Openstack

2016-11-14 Thread Katherine Beaulieu
Hi Enis, Yes I did go through this process and got stuck at running the images.yml file. I wasn't able to run with packer so am trying it without it. Here is the error I got stopped at: TASK [smola.java : Install Java packages] ** Monday 14 November 2016

Re: [galaxy-dev] Galaxy on the Cloud with Openstack

2016-11-14 Thread Enis Afgan
Hi Katherine, A good starting point is the official documentation available here https://wiki.galaxyproject.org/CloudMan/Building. It links to a few more technical README's from there. Did you go through this? Were there issues you encountered? Overall, the complete deployment is a reasonably