[galaxy-dev] Mac OS X, edgeR installtion

2017-06-20 Thread Bongsoo Park
Hi All, I faced a problem in edgeR execution. My test environment is MacOS X, R version 3.3.2. Error message: Fatal error: Matched on Execution halted Error: package ‘limma’ was built for x86_64-apple-darwin14.5.0 Execution halted Anyone has the sample problem? Thanks in advance. Bongsoo

[galaxy-dev] dexseq pysam error

2017-06-20 Thread Rui Wang
Hi Folks, I got the galaxy docker image and played with it. However, I keep getting this when I use dexseq: Fatal error: Exit code 1 () Could not import pysam, which is needed to process BAM file (though not to process text SAM files). Please install the 'pysam' library from

Re: [galaxy-dev] Singularity Container forks ?

2017-06-20 Thread John Chilton
Yup - I messed that up - sorry. Can you try the fix in this PR ( https://github.com/galaxyproject/galaxy/pull/4208) and comment on the PR to let me know if they fix the problem? -John On Mon, Jun 19, 2017 at 10:24 AM, Nikos Nikoloutsakos < nikolou...@admin.grnet.gr> wrote: > Hi Bjoern, > i'm