[galaxy-dev] Error with run as real user, unable to read file

2017-08-25 Thread Evan Clark
We are setting up run as real user but have run into a strange issue. When the drmaa external script is called it could not load the job json file. All permissions are set properly and the file exists. Upon attempting to run the script by itself this error is created. When loading a test script

Re: [galaxy-dev] unipept visualization

2017-08-25 Thread Aysam Guerler
Hi Matthias, Have you added the visulization to Charts or the regular Galaxy visualization framework? If it is the latter please make sure that you correctly specified the datatype in your XML file. Your visualization should than appear in the drop-down list in the history. Thanks, Sam On Fri, A

Re: [galaxy-dev] Firefox drag and drop not working

2017-08-25 Thread Aysam Guerler
Thanks for reporting this. A PR which should fix this issue is available here: https://github.com/galaxyproject/galaxy/pull/4496 On Fri, Aug 25, 2017 at 7:43 AM, SAPET, Frederic < frederic.sa...@biogemma.com> wrote: > Hi > > Same behavior for me. > Chrome (60.0) and IE (11.0.9600) are fine. > > F

Re: [galaxy-dev] Firefox drag and drop not working

2017-08-25 Thread SAPET, Frederic
Hi Same behavior for me. Chrome (60.0) and IE (11.0.9600) are fine. Fred -Message d'origine- De : galaxy-dev [mailto:galaxy-dev-boun...@lists.galaxyproject.org] De la part de Jochen Bick Envoyé : vendredi 25 août 2017 10:39 À : galaxy-dev@lists.galaxyproject.org Objet : [galaxy-dev] Fir

Re: [galaxy-dev] Firefox drag and drop not working

2017-08-25 Thread SAPET, Frederic
Hi Same behavior for me. Chrome (60.0) and IE (11.0.9600) are fine. Fred -Message d'origine- De : galaxy-dev [mailto:galaxy-dev-boun...@lists.galaxyproject.org] De la part de Jochen Bick Envoyé : vendredi 25 août 2017 10:39 À : galaxy-dev@lists.galaxyproject.org Objet : [galaxy-dev] F

[galaxy-dev] unipept visualization

2017-08-25 Thread Matthias Bernt
Dear list, I can not get the wonderful unipept visualization to work on our Galaxy instance (a test instance on the dev branch). I get the message: "Unfortunately we could not identify a suitable plugin" The file I try to visualize was generated by unipept (pept2lca) and is of format d3_h

[galaxy-dev] Firefox drag and drop not working

2017-08-25 Thread Jochen Bick
Hi all, we recently updated to our galaxy server and now we would like to use the new feature drag and drop items from the history. It does not work with Firefox but with chrome. In Firefox it says: The address isn’t valid The URL is not valid and cannot be loaded. Web addresses are usually